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survtype

Subtype Identification with Survival Data

Bioconductor version: 3.24 · Package version: 1.29.0

Subtypes are defined as groups of samples that have distinct molecular and clinical features. Genomic data can be analyzed for discovering patient subtypes, associated with clinical data, especially for survival information. This package is aimed to identify subtypes that are both clinically relevant and biologically meaningful.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("survtype")

Details

MaintainerDongmin Jung <dmdmjung@gmail.com>
AuthorDongmin Jung
LicenseArtistic-2.0
Downloads rank371
Source branchdevel
biocViewsClustering, Coverage, GeneExpression, Sequencing, Software, StatisticalMethod, Survival

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagesurvtype_1.29.0.tar.gz
Windows binary (x86_64)survtype_1.29.0.zip
macOS binary (arm64)survtype_1.29.0.tgz
macOS binary (x86_64)survtype_1.29.0.tgz
Dependencies

Depends: SummarizedExperiment, pheatmap, survival, survminer, clustvarsel, stats, utils

Suggests: maftools, scales, knitr, rmarkdown