snifter
R wrapper for the python openTSNE library
Bioconductor version: 3.24 · Package version: 1.23.0
Provides an R wrapper for the implementation of FI-tSNE from the python package openTNSE. See Poličar et al. (2019) <doi:10.1101/731877> and the algorithm described by Linderman et al. (2018) <doi:10.1038/s41592-018-0308-4>.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("snifter")Details
| Maintainer | Alan O'Callaghan <alan.ocallaghan@outlook.com> |
| Author | Alan O'Callaghan [aut, cre], Aaron Lun [aut] |
| License | GPL-3 |
| URL | https://bioconductor.org/packages/snifter |
| Bug Reports | https://github.com/Alanocallaghan/snifter/issues |
| Downloads rank | 810 |
| Source branch | devel |
| biocViews | DimensionReduction, Sequencing, SingleCell, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | snifter_1.23.0.tar.gz |
| Windows binary (x86_64) | snifter_1.23.0.zip |
| macOS binary (arm64) | snifter_1.23.0.tgz |
| macOS binary (x86_64) | snifter_1.23.0.tgz |
Dependencies
Depends: R (>= 4.0.0)
Imports: basilisk, reticulate, irlba, stats, assertthat
Suggests: knitr, rmarkdown, BiocStyle, ggplot2, testthat (>= 3.0.0)