seqPattern
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
Bioconductor version: 3.24 · Package version: 1.45.0
Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("seqPattern")Details
| Maintainer | Vanja Haberle <vanja.haberle@gmail.com> |
| Author | Vanja Haberle <vanja.haberle@gmail.com> |
| License | GPL-3 |
| Downloads rank | 1374 |
| Source branch | devel |
| biocViews | SequenceMatching, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | seqPattern_1.45.0.tar.gz |
| Windows binary (x86_64) | seqPattern_1.45.0.zip |
| macOS binary (arm64) | seqPattern_1.45.0.tgz |
| macOS binary (x86_64) | seqPattern_1.45.0.tgz |
Dependencies
Depends: methods, R (>= 2.15.0)
Imports: Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix
Suggests: BSgenome.Drerio.UCSC.danRer7, CAGEr, RUnit, BiocGenerics, BiocStyle
Enhances: parallel
Reverse dependencies
Imports Me (1): genomation