seqCAT
High Throughput Sequencing Cell Authentication Toolkit
Bioconductor version: 3.24 · Package version: 1.35.1
The seqCAT package uses variant calling data (in the form of VCF files) from high throughput sequencing technologies to authenticate and validate the source, function and characteristics of biological samples used in scientific endeavours.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("seqCAT")Details
| Maintainer | Erik Fasterius <erik.fasterius@outlook.com> |
| Author | Erik Fasterius [aut, cre] |
| License | MIT + file LICENCE |
| Downloads rank | 519 |
| Source branch | devel |
| biocViews | Coverage, GenomicVariation, Sequencing, Software, VariantAnnotation |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | seqCAT_1.35.1.tar.gz |
| Windows binary (x86_64) | seqCAT_1.35.1.zip |
| macOS binary (arm64) | seqCAT_1.35.1.tgz |
| macOS binary (x86_64) | seqCAT_1.35.1.tgz |
Dependencies
Depends: R (>= 3.6), GenomicRanges (>= 1.26.4), VariantAnnotation (>= 1.20.3)
Imports: dplyr (>= 0.5.0), GenomeInfoDb (>= 1.13.4), ggplot2 (>= 2.2.1), grid (>= 3.5.0), IRanges (>= 2.8.2), methods, rtracklayer, rlang, scales (>= 0.4.1), S4Vectors (>= 0.12.2), stats, SummarizedExperiment (>= 1.4.0), tidyr (>= 0.6.1), utils
Suggests: knitr, BiocStyle, rmarkdown, testthat, BiocManager