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scRNAseqApp

A single-cell RNAseq Shiny app-package

Bioconductor version: 3.24 · Package version: 1.13.32

The scRNAseqApp is a Shiny app package designed for interactive visualization of single-cell data. It is an enhanced version derived from the ShinyCell, repackaged to accommodate multiple datasets. The app enables users to visualize data containing various types of information simultaneously, facilitating comprehensive analysis. Additionally, it includes a user management system to regulate database accessibility for different users.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scRNAseqApp")

Details

MaintainerJianhong Ou <jou@morgridge.org>
AuthorJianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>)
LicenseGPL-3
URLhttps://github.com/jianhong/scRNAseqApp
Bug Reportshttps://github.com/jianhong/scRNAseqApp/issues
Downloads rank434
Source branchdevel
biocViewsDataRepresentation, GeneExpression, RNASeq, ShinyApps, SingleCell, Software, Spatial, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagescRNAseqApp_1.13.32.tar.gz
Windows binary (x86_64)scRNAseqApp_1.13.32.zip
macOS binary (arm64)scRNAseqApp_1.13.32.tgz
macOS binary (x86_64)scRNAseqApp_1.13.32.tgz
Dependencies

Depends: R (>= 4.3.0)

Imports: bibtex, bslib, BiocGenerics, circlize, ComplexHeatmap, colourpicker, data.table, desc, DBI, DT, fs, GenomicRanges, GenomeInfoDb, ggdendro, ggforce, ggnewscale, ggplot2, ggrepel, ggridges, grDevices, grid, gridExtra, htmltools, IRanges, jsonlite, Matrix, magrittr, markdown, methods, patchwork, plotly, promises, RColorBrewer, RefManageR, reshape2, rhdf5, Rsamtools, RSQLite, rtracklayer, S4Vectors, scales, scrypt, Seurat, SeuratObject, shiny, shinyhelper, shinymanager, slingshot, SingleCellExperiment, sortable, stats, tools, xfun, xml2, utils

Suggests: rmarkdown, knitr, testthat, BiocStyle, shinytest2

Enhances: celldex, future, SingleR, SummarizedExperiment, tricycle, terra