roar
Identify differential APA usage from RNA-seq alignments
Bioconductor version: 3.24 · Package version: 1.49.0
Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("roar")Details
| Maintainer | Elena Grassi <grassi.e@gmail.com> |
| Author | Elena Grassi |
| License | GPL-3 |
| URL | https://github.com/vodkatad/roar/ |
| Downloads rank | 625 |
| Source branch | devel |
| biocViews | HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | roar_1.49.0.tar.gz |
| Windows binary (x86_64) | roar_1.49.0.zip |
| macOS binary (arm64) | roar_1.49.0.tgz |
| macOS binary (x86_64) | roar_1.49.0.tgz |
Dependencies
Depends: R (>= 3.0.1)
Imports: methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments (>= 0.99.4), rtracklayer, GenomeInfoDb
Suggests: RNAseqData.HNRNPC.bam.chr14, testthat