rmelting

R Interface to MELTING 5

Bioconductor version: 3.24 · Package version: 1.29.0

R interface to the MELTING 5 program (https://www.ebi.ac.uk/biomodels/tools/melting/) to compute melting temperatures of nucleic acid duplexes along with other thermodynamic parameters.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rmelting")

Details

Maintainer	J. Aravind <j.aravind@icar.gov.in>
Author	J. Aravind [aut, cre] (ORCID: <https://orcid.org/0000-0002-4791-442X>), G. K. Krishna [aut], Bob Rudis [ctb] (melting5jars), Nicolas Le Novère [ctb] (MELTING 5 Java Library), Marine Dumousseau [ctb] (MELTING 5 Java Library), William John Gowers [ctb] (MELTING 5 Java Library)
License	GPL-2 \| GPL-3
URL	https://github.com/aravind-j/rmelting, https://aravind-j.github.io/rmelting/
Bug Reports	https://github.com/aravind-j/rmelting/issues
System Requirements	Java
Downloads rank	360
Source branch	devel
biocViews	BiomedicalInformatics, Cheminformatics, Software

Documentation

Computation of melting temperature of nucleic acid duplexes with rmelting

Download

Follow the installation instructions to use this package in your R session.

Source package	rmelting_1.29.0.tar.gz
Windows binary (x86_64)	rmelting_1.29.0.zip
macOS binary (arm64)	rmelting_1.29.0.tgz
macOS binary (x86_64)	rmelting_1.29.0.tgz

Dependencies

Depends: R (>= 3.6)

Imports: Rdpack, rJava (>= 0.9-8)

Suggests: readxl, knitr, rmarkdown, reshape2, pander, testthat