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rain

Rhythmicity Analysis Incorporating Non-parametric Methods

Bioconductor version: 3.24 · Package version: 1.47.0

This package uses non-parametric methods to detect rhythms in time series. It deals with outliers, missing values and is optimized for time series comprising 10-100 measurements. As it does not assume expect any distinct waveform it is optimal or detecting oscillating behavior (e.g. circadian or cell cycle) in e.g. genome- or proteome-wide biological measurements such as: micro arrays, proteome mass spectrometry, or metabolome measurements.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rain")

Details

MaintainerPaul F. Thaben <paul.thaben@charite.de>
AuthorPaul F. Thaben, Pål O. Westermark
LicenseGPL-2
Downloads rank564
Source branchdevel
biocViewsGenetics, Microarray, MultipleComparison, Proteomics, Software, SystemsBiology, TimeCourse

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagerain_1.47.0.tar.gz
Windows binary (x86_64)rain_1.47.0.zip
macOS binary (arm64)rain_1.47.0.tgz
macOS binary (x86_64)rain_1.47.0.tgz
Dependencies

Depends: R (>= 2.10), gmp, multtest

Suggests: lattice, BiocStyle