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rWikiPathways

rWikiPathways - R client library for the WikiPathways API

Bioconductor version: 3.24 · Package version: 1.33.0

Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rWikiPathways")

Details

MaintainerEgon Willighagen <egon.willighagen@gmail.com>
AuthorEgon Willighagen [aut, cre] (ORCID: <https://orcid.org/0000-0001-7542-0286>), Alex Pico [aut] (ORCID: <https://orcid.org/0000-0001-5706-2163>)
LicenseMIT + file LICENSE
URLhttps://github.com/wikipathways/rWikiPathways
Bug Reportshttps://github.com/wikipathways/rWikiPathways/issues
Downloads rank748
Source branchdevel
biocViewsGraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagerWikiPathways_1.33.0.tar.gz
Windows binary (x86_64)rWikiPathways_1.33.0.zip
macOS binary (arm64)rWikiPathways_1.33.0.tgz
macOS binary (x86_64)rWikiPathways_1.33.0.tgz
Dependencies

Imports: httr, utils, XML, rjson, data.table, RCurl, dplyr, tidyr, readr, stringr, purrr, lubridate

Suggests: testthat, BiocStyle, knitr, rmarkdown

Reverse dependencies

Imports Me (2): famat, NoRCE

Suggests Me (2): PinPath, TRONCO