pvac
PCA-based gene filtering for Affymetrix arrays
Bioconductor version: 3.24 · Package version: 1.61.0
The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pvac")Details
| Maintainer | Jun Lu <jlu276@gmail.com>, Pierre R. Bushel <bushel@niehs.nih.gov> |
| Author | Jun Lu and Pierre R. Bushel |
| License | LGPL (>= 2.0) |
| Downloads rank | 505 |
| Source branch | devel |
| biocViews | Microarray, OneChannel, QualityControl, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | pvac_1.61.0.tar.gz |
| Windows binary (x86_64) | pvac_1.61.0.zip |
| macOS binary (arm64) | pvac_1.61.0.tgz |
| macOS binary (x86_64) | pvac_1.61.0.tgz |
Dependencies
Depends: R (>= 2.8.0)
Imports: affy (>= 1.20.0), stats, Biobase
Suggests: pbapply, affydata, ALLMLL, genefilter