planet
Placental DNA methylation analysis tools
Bioconductor version: 3.24 · Package version: 1.21.0
This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("planet")Details
| Maintainer | Victor Yuan <victor.2wy@gmail.com> |
| Author | Victor Yuan [aut, cre], Wendy P. Robinson [aut, ctb], Icíar Fernández-Boyano [aut, ctb] |
| License | GPL-2 |
| URL | http://github.com/wvictor14/planet, http://victoryuan.com/planet/ |
| Bug Reports | http://github.com/wvictor14/planet/issues |
| Downloads rank | 562 |
| Source branch | devel |
| biocViews | CpGIsland, DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Microarray, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | planet_1.21.0.tar.gz |
| Windows binary (x86_64) | planet_1.21.0.zip |
| macOS binary (arm64) | planet_1.21.0.tgz |
| macOS binary (x86_64) | planet_1.21.0.tgz |
Dependencies
Depends: R (>= 4.3)
Imports: methods, tibble, magrittr, dplyr
Suggests: ExperimentHub, mixOmics, ggplot2, testthat, tidyr, scales, minfi, EpiDISH, knitr, rmarkdown
Reverse dependencies
Suggests Me (1): eoPredData