mzID
An mzIdentML parser for R
Bioconductor version: 3.24 · Package version: 1.51.0
A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mzID") Details
| Maintainer | Laurent Gatto <laurent.gatto@uclouvain.be> |
| Author | Laurent Gatto [ctb, cre] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Thomas Pedersen [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Vladislav Petyuk [ctb] |
| License | GPL (>= 2) |
| Downloads rank | 4204 |
| Source branch | devel |
| biocViews | DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | mzID_1.51.0.tar.gz |
| Windows binary (x86_64) | mzID_1.51.0.zip |
| macOS binary (arm64) | mzID_1.51.0.tgz |
| macOS binary (x86_64) | mzID_1.51.0.tgz |
Dependencies
Depends: methods
Imports: XML, plyr, parallel, doParallel, foreach, iterators, ProtGenerics
Reverse dependencies
Imports Me (3): MSnbase, MSnID, TargetDecoy
Suggests Me (4): mzR, PepMapViz, PSMatch, RforProteomics