multiMiR

Integration of multiple microRNA-target databases with their disease and drug associations

Bioconductor version: 3.24 · Package version: 1.35.0

A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("multiMiR")

Details

Maintainer	Spencer Mahaffey <Spencer.Mahaffey@cuanschutz.edu>
Author	Yuanbin Ru [aut], Matt Mulvahill [aut], Spencer Mahaffey [cre, aut], Katerina Kechris [aut, cph, ths]
License	MIT + file LICENSE
URL	https://github.com/KechrisLab/multiMiR
Bug Reports	https://github.com/KechrisLab/multiMiR/issues
Downloads rank	1162
Source branch	devel
biocViews	Homo_sapiens_Data, Mus_musculus_Data, OrganismData, Rattus_norvegicus_Data, Software, miRNAData

Documentation

The multiMiR user's guide

Download

Follow the installation instructions to use this package in your R session.

Source package	multiMiR_1.35.0.tar.gz
Windows binary (x86_64)	multiMiR_1.35.0.zip
macOS binary (arm64)	multiMiR_1.35.0.tgz
macOS binary (x86_64)	multiMiR_1.35.0.tgz

Dependencies

Depends: R (>= 3.4)

Imports: stats, XML, RCurl, purrr (>= 0.2.2), tibble (>= 2.0), methods, BiocGenerics, AnnotationDbi, dplyr

Suggests: BiocStyle, edgeR, knitr, rmarkdown, testthat (>= 1.0.2)

Reverse dependencies

Suggests Me (1): EpiMix