miRcomp
Tools to assess and compare miRNA expression estimatation methods
Bioconductor version: 3.24 · Package version: 1.43.0
Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miRcomp")Details
| Maintainer | Matthew N. McCall <mccallm@gmail.com> |
| Author | Matthew N. McCall <mccallm@gmail.com>, Lauren Kemperman <lkemperm@u.rochester.edu> |
| License | GPL-3 | file LICENSE |
| Downloads rank | 550 |
| Source branch | devel |
| biocViews | Preprocessing, QualityControl, Software, qPCR |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | miRcomp_1.43.0.tar.gz |
| Windows binary (x86_64) | miRcomp_1.43.0.zip |
| macOS binary (arm64) | miRcomp_1.43.0.tgz |
| macOS binary (x86_64) | miRcomp_1.43.0.tgz |
Dependencies
Depends: R (>= 3.5.0), Biobase (>= 2.22.0), miRcompData
Imports: utils, methods, graphics, KernSmooth, stats
Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, shiny