miRNAtap
miRNAtap: microRNA Targets - Aggregated Predictions
Bioconductor version: 3.24 · Package version: 1.47.0
The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miRNAtap")Details
| Maintainer | T. Ian Simpson <ian.simpson@ed.ac.uk> |
| Author | Maciej Pajak, T. Ian Simpson |
| License | GPL-2 |
| Downloads rank | 583 |
| Source branch | devel |
| biocViews | Classification, Microarray, Sequencing, Software, miRNA |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | miRNAtap_1.47.0.tar.gz |
| Windows binary (x86_64) | miRNAtap_1.47.0.zip |
| macOS binary (arm64) | miRNAtap_1.47.0.tgz |
| macOS binary (x86_64) | miRNAtap_1.47.0.tgz |
Dependencies
Depends: R (>= 3.3.0), AnnotationDbi
Imports: DBI, RSQLite, stringr, sqldf, plyr, methods
Suggests: topGO, org.Hs.eg.db, miRNAtap.db, testthat