igvShiny
igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)
Bioconductor version: 3.24 · Package version: 1.9.49
This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("igvShiny")Details
| Maintainer | Arkadiusz Gladki <gladki.arkadiusz@gmail.com> |
| Author | Paul Shannon [aut], Arkadiusz Gladki [aut, cre] (ORCID: <https://orcid.org/0000-0002-7059-6378>), Karolina Scigocka [aut], Carolina Heimann [ctb], Steffen Klasberg [ctb], Vincent Carey [ctb], Parv Sachdeva [ctb], Mateusz Gladki [ctb], R Consortium [fnd] |
| License | MIT + file LICENSE |
| URL | https://github.com/gladkia/igvShiny, https://gladkia.github.io/igvShiny/ |
| Bug Reports | https://github.com/gladkia/igvShiny/issues |
| Downloads rank | 399 |
| Source branch | devel |
| biocViews | Coverage, Sequencing, ShinyApps, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | igvShiny_1.9.49.tar.gz |
| Windows binary (x86_64) | igvShiny_1.9.47.zip |
| macOS binary (arm64) | igvShiny_1.9.49.tgz |
| macOS binary (x86_64) | igvShiny_1.9.49.tgz |
Dependencies
Depends: R (>= 3.5.0), GenomicRanges, methods, shiny (>= 1.6.0)
Imports: BiocGenerics, checkmate, futile.logger, GenomeInfoDb, GenomeInfoDbData, htmlwidgets, httr, jsonlite, randomcoloR, stats, utils
Suggests: BiocStyle, bslib, covr, GenomicAlignments, knitr, Rhtslib, Rsamtools, rtracklayer, shinytest2, testthat, VariantAnnotation
Reverse dependencies
Imports Me (1): damidBind