iSEEu

iSEE Universe

Bioconductor version: 3.24 · Package version: 1.25.0

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEu")

Details

Maintainer	Kevin Rue-Albrecht <kevinrue67@gmail.com>
Author	Kevin Rue-Albrecht [aut, cre] (ORCID: <https://orcid.org/0000-0003-3899-3872>), Charlotte Soneson [aut] (ORCID: <https://orcid.org/0000-0003-3833-2169>), Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>), Aaron Lun [aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>), Michael Stadler [ctb]
License	MIT + file LICENSE
URL	https://github.com/iSEE/iSEEu
Bug Reports	https://github.com/iSEE/iSEEu/issues
Downloads rank	541
Source branch	devel
biocViews	CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization

Documentation

Universe of iSEE panels

Download

Follow the installation instructions to use this package in your R session.

Source package	iSEEu_1.25.0.tar.gz
Windows binary (x86_64)	iSEEu_1.25.0.zip
macOS binary (arm64)	iSEEu_1.25.0.tgz
macOS binary (x86_64)	iSEEu_1.25.0.tgz

Dependencies

Depends: iSEE, iSEEhex

Imports: methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2 (>= 3.4.0), DT, stats, colourpicker, shinyAce

Suggests: scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr

Reverse dependencies

Imports Me (1): iSEEfier