iSEEtree
Interactive visualisation for microbiome data
Bioconductor version: 3.24 · Package version: 1.7.0
iSEEtree is an extension of iSEE for the TreeSummarizedExperiment data container. It provides interactive panel designs to explore hierarchical datasets, such as the microbiome and cell lines.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEtree")Details
| Maintainer | Giulio Benedetti <giulio.benedetti@utu.fi> |
| Author | Giulio Benedetti [aut, cre] (ORCID: <https://orcid.org/0000-0002-8732-7692>), Ely Seraidarian [ctb] (ORCID: <https://orcid.org/0009-0008-8602-093X>), Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>) |
| License | Artistic-2.0 |
| URL | https://github.com/microbiome/iSEEtree |
| Bug Reports | https://github.com/microbiome/iSEEtree/issues |
| Downloads rank | 352 |
| Source branch | devel |
| biocViews | DataImport, GUI, Microbiome, ShinyApps, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | iSEEtree_1.7.0.tar.gz |
| Windows binary (x86_64) | iSEEtree_1.7.0.zip |
| macOS binary (arm64) | iSEEtree_1.7.0.tgz |
| macOS binary (x86_64) | iSEEtree_1.7.0.tgz |
Dependencies
Depends: R (>= 4.4.0), iSEE (>= 2.19.4)
Imports: ape, ggplot2, ggtree, grDevices, methods, miaViz, purrr, S4Vectors, shiny, mia, shinyWidgets, SingleCellExperiment, SummarizedExperiment, tidygraph, TreeSummarizedExperiment, utils
Suggests: biomformat, BiocStyle, knitr, RefManageR, remotes, rmarkdown, scater, testthat (>= 3.0.0), vegan
Reverse dependencies
Imports Me (1): miaDash