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iCNV

Integrated Copy Number Variation detection

Bioconductor version: 3.24 · Package version: 1.33.0

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iCNV")

Details

MaintainerZilu Zhou <zhouzilu@pennmedicine.upenn.edu>
AuthorZilu Zhou, Nancy Zhang
LicenseGPL-2
Downloads rank387
Source branchdevel
biocViewsCopyNumberVariation, ExomeSeq, HiddenMarkovModel, ImmunoOncology, SNP, Software, WholeGenome

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageiCNV_1.33.0.tar.gz
Windows binary (x86_64)iCNV_1.33.0.zip
macOS binary (arm64)iCNV_1.33.0.tgz
macOS binary (x86_64)iCNV_1.33.0.tgz
Dependencies

Depends: R (>= 3.3.1), CODEX

Imports: fields, ggplot2, truncnorm, tidyr, data.table, dplyr, grDevices, graphics, stats, utils, rlang

Suggests: knitr, rmarkdown, WES.1KG.WUGSC