hicVennDiagram

Venn Diagram for genomic interaction data

Bioconductor version: 3.24 · Package version: 1.11.0

A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hicVennDiagram")

Details

Maintainer	Jianhong Ou <jou@morgridge.org>
Author	Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>)
License	GPL-3
URL	https://github.com/jianhong/hicVennDiagram
Bug Reports	https://github.com/jianhong/hicVennDiagram/issues
Downloads rank	339
Source branch	devel
biocViews	DNA3DStructure, HiC, Software, Visualization

Documentation

hicVennDiagram Vignette: overview

Download

Follow the installation instructions to use this package in your R session.

Source package	hicVennDiagram_1.11.0.tar.gz
Windows binary (x86_64)	hicVennDiagram_1.11.0.zip
macOS binary (arm64)	hicVennDiagram_1.11.0.tgz
macOS binary (x86_64)	hicVennDiagram_1.11.0.tgz

Dependencies

Depends: R (>= 4.3.0)

Imports: Seqinfo, GenomicRanges, IRanges, InteractionSet, rtracklayer, ggplot2, ComplexUpset, reshape2, eulerr, S4Vectors, methods, utils, htmlwidgets, svglite

Suggests: BiocStyle, knitr, rmarkdown, testthat, ChIPpeakAnno, grid, TxDb.Hsapiens.UCSC.hg38.knownGene