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hdxmsqc

An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments

Bioconductor version: 3.24 · Package version: 1.9.0

The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hdxmsqc")

Details

MaintainerOliver M. Crook <oliver.crook@stats.ox.ac.uk>
AuthorOliver M. Crook [aut, cre] (ORCID: <https://orcid.org/0000-0001-5669-8506>)
Licensefile LICENSE
URLhttp://github.com/ococrook/hdxmsqc
Bug Reportshttps://github.com/ococrook/hdxmsqc/issues
Downloads rank366
Source branchdevel
biocViewsDataImport, MassSpectrometry, Metabolomics, Proteomics, QualityControl, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagehdxmsqc_1.9.0.tar.gz
Windows binary (x86_64)hdxmsqc_1.9.0.zip
macOS binary (arm64)hdxmsqc_1.9.0.tgz
macOS binary (x86_64)hdxmsqc_1.9.0.tgz
Dependencies

Depends: R (>= 4.3), QFeatures, S4Vectors, Spectra

Imports: dplyr, tidyr, ggplot2, BiocStyle, knitr, methods, grDevices, stats, MsCoreUtils

Suggests: RColorBrewer, pheatmap, MASS, patchwork, testthat