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globalSeq

Global Test for Counts

Bioconductor version: 3.24 · Package version: 1.41.0

The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("globalSeq")

Details

MaintainerArmin Rauschenberger <armin.rauschenberger@uni.lu>
AuthorArmin Rauschenberger [aut, cre]
LicenseGPL-3
URLhttps://github.com/rauschenberger/globalSeq
Bug Reportshttps://github.com/rauschenberger/globalSeq/issues
Downloads rank422
Source branchdevel
biocViewsDifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageglobalSeq_1.41.0.tar.gz
Windows binary (x86_64)globalSeq_1.41.0.zip
macOS binary (arm64)globalSeq_1.41.0.tgz
macOS binary (x86_64)globalSeq_1.41.0.tgz
Dependencies

Depends: R (>= 3.0.0)

Suggests: knitr, testthat, SummarizedExperiment, S4Vectors