flowGate
Interactive Cytometry Gating in R
Bioconductor version: 3.24 · Package version: 1.13.1
flowGate adds an interactive Shiny app to allow manual GUI-based gating of flow cytometry data in R. Using flowGate, you can draw 1D and 2D span/rectangle gates, quadrant gates, and polygon gates on flow cytometry data by interactively drawing the gates on a plot of your data, rather than by specifying gate coordinates. This package is especially geared toward wet-lab cytometerists looking to take advantage of R for cytometry analysis, without necessarily having a lot of R experience.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowGate")Details
| Maintainer | Andrew Wight <andrew.wight10@gmail.com> |
| Author | Andrew Wight [aut, cre] (ORCID: <https://orcid.org/0000-0003-3116-8722>), Harvey Cantor [aut, ldr] (ORCID: <https://orcid.org/0000-0002-3313-2478>) |
| License | MIT + file LICENSE |
| URL | https://www.bioconductor.org/packages/release/bioc/html/flowGate.html |
| Bug Reports | https://github.com/NKInstinct/flowGate/issues |
| Downloads rank | 380 |
| Source branch | devel |
| biocViews | DataImport, FlowCytometry, ImmunoOncology, Preprocessing, Software, WorkflowStep |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | flowGate_1.13.1.tar.gz |
| Windows binary (x86_64) | flowGate_1.13.1.zip |
| macOS binary (arm64) | flowGate_1.13.1.tgz |
| macOS binary (x86_64) | flowGate_1.13.1.tgz |
Dependencies
Depends: flowWorkspace (>= 4.0.6), ggcyto (>= 1.16.0), R (>= 4.4)
Imports: shiny (>= 1.5.0), BiocManager (>= 1.30.10), flowCore (>= 2.0.1), dplyr (>= 1.0.0), ggplot2 (>= 3.3.2), rlang (>= 0.4.7), purrr, tibble, methods, openCyto, stringr