fastRanges

Deterministic Multithreaded Genomic Interval Operations

Bioconductor version: 3.24 · Package version: 1.1.0

High-performance interval overlap and join operations for 'IRanges' and 'GenomicRanges'. The package provides deterministic multithreaded overlap computation, reusable subject indexes for repeated queries, and join helpers that keep range metadata in a consistent output grammar.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fastRanges")

Details

Maintainer	Chirag Parsania <chirag.parsania@gmail.com>
Author	Chirag Parsania [aut, cre] (github: cparsania)
License	Artistic-2.0
URL	https://github.com/cparsania/fastRanges, https://cparsania.github.io/fastRanges/
Bug Reports	https://github.com/cparsania/fastRanges/issues
System Requirements	quarto
Downloads rank	215
Source branch	devel
biocViews	Infrastructure, Sequencing, Software

Documentation

fastRanges: A Practical Introduction to Genomic Interval Analysis

Download

Follow the installation instructions to use this package in your R session.

Source package	fastRanges_1.1.0.tar.gz
Windows binary (x86_64)	fastRanges_1.1.0.zip
macOS binary (arm64)	fastRanges_1.1.0.tgz
macOS binary (x86_64)	fastRanges_1.1.0.tgz

Dependencies

Depends: R (>= 4.5.0)

Imports: methods, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, Rcpp

LinkingTo: Rcpp

Suggests: BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, pkgdown, XVector, ggplot2, dplyr, tidyr, scales