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fCI

f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Bioconductor version: 3.24 · Package version: 1.43.0

(f-divergence Cutoff Index), is to find DEGs in the transcriptomic & proteomic data, and identify DEGs by computing the difference between the distribution of fold-changes for the control-control and remaining (non-differential) case-control gene expression ratio data. fCI provides several advantages compared to existing methods.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fCI")

Details

MaintainerShaojun Tang <tangshao2008@gmail.com>
AuthorShaojun Tang
LicenseGPL (>= 2)
Downloads rank442
Source branchdevel
biocViewsProteomics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagefCI_1.43.0.tar.gz
Windows binary (x86_64)fCI_1.43.0.zip
macOS binary (arm64)fCI_1.43.0.tgz
macOS binary (x86_64)fCI_1.43.0.tgz
Dependencies

Depends: R (>= 3.1), FNN, psych, gtools, zoo, rgl, grid, VennDiagram

Suggests: knitr, rmarkdown, BiocStyle