exploreSE
Explorer for Your Bulk RNA Seq Analyses
Bioconductor version: 3.24 · Package version: 0.99.6
Interactive exploration of a Summarized experiment and associated DE analyses. A shiny app to inspect and interact with pre-calculated differential expression and functional enrichment results, and to facilitate comparisons between multiple models. This is meant to be a tool for exploration and discussion, rather than analysis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("exploreSE") Details
| Maintainer | Jasper Spitzer <jasspitzer135@gmail.com> |
| Author | Jasper Spitzer [aut, cre] (ORCID: <https://orcid.org/0000-0001-9696-2092>) |
| License | MIT + file LICENSE |
| URL | https://github.com/jaspitzer/exploreSE |
| Bug Reports | https://github.com/jaspitzer/exploreSE/issues |
| Downloads rank | 4 |
| Source branch | devel |
| biocViews | GO, GeneExpression, Pathways, RNASeq, ShinyApps, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | exploreSE_0.99.6.tar.gz |
| macOS binary (arm64) | exploreSE_0.99.5.tgz |
| macOS binary (x86_64) | exploreSE_0.99.6.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: BiocGenerics, clusterProfiler, colourpicker, DeeDeeExperiment, DESeq2, dplyr, DT, forcats, ggplot2, htmltools, magrittr, matrixStats, methods, msigdbr, org.Hs.eg.db, org.Mm.eg.db, plotly, purrr, readr, rlang, S4Vectors, shiny, shinyWidgets, stats, stringr, SummarizedExperiment, tibble, tidyr, tidyselect
Suggests: airway, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)