derfinderPlot
Plotting functions for derfinder
Bioconductor version: 3.24 · Package version: 1.47.0
This package provides plotting functions for results from the derfinder package. This helps separate the graphical dependencies required for making these plots from the core functionality of derfinder.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("derfinderPlot")Details
| Maintainer | Leonardo Collado-Torres <lcolladotor@gmail.com> |
| Author | Leonardo Collado-Torres [aut, cre] (ORCID: <https://orcid.org/0000-0003-2140-308X>), Andrew E. Jaffe [aut] (ORCID: <https://orcid.org/0000-0001-6886-1454>), Jeffrey T. Leek [aut, ths] (ORCID: <https://orcid.org/0000-0002-2873-2671>) |
| License | Artistic-2.0 |
| URL | https://github.com/leekgroup/derfinderPlot |
| Bug Reports | https://support.bioconductor.org/t/derfinderPlot |
| Downloads rank | 721 |
| Source branch | devel |
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization |
Download
Follow the installation instructions to use this package in your R session.
| Source package | derfinderPlot_1.47.0.tar.gz |
| Windows binary (x86_64) | derfinderPlot_1.47.0.zip |
| macOS binary (arm64) | derfinderPlot_1.47.0.tgz |
| macOS binary (x86_64) | derfinderPlot_1.47.0.tgz |
Dependencies
Depends: R (>= 3.2)
Imports: derfinder (>= 1.1.0), Seqinfo, GenomeInfoDb (>= 1.45.9), GenomicFeatures, GenomicRanges (>= 1.17.40), ggbio (>= 1.13.13), ggplot2, graphics, grDevices, IRanges (>= 1.99.28), limma, methods, plyr, RColorBrewer, reshape2, S4Vectors (>= 0.9.38), scales, utils
Suggests: biovizBase (>= 1.27.2), bumphunter (>= 1.7.6), derfinderData (>= 0.99.0), sessioninfo, knitr (>= 1.6), BiocStyle (>= 2.5.19), org.Hs.eg.db, RefManageR, rmarkdown (>= 0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, covr
Reverse dependencies
Imports Me (1): recountWorkflow
Suggests Me (3): derfinder, GenomicState, regionReport