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covEB

Empirical Bayes estimate of block diagonal covariance matrices

Bioconductor version: 3.24 · Package version: 1.39.0

Using bayesian methods to estimate correlation matrices assuming that they can be written and estimated as block diagonal matrices. These block diagonal matrices are determined using shrinkage parameters that values below this parameter to zero.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("covEB")

Details

MaintainerC. Pacini <clarepacini@gmail.com>
AuthorC. Pacini
LicenseGPL-3
Downloads rank420
Source branchdevel
biocViewsBayesian, GeneExpression, ImmunoOncology, Microarray, Preprocessing, RNASeq, Software, StatisticalMethod

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagecovEB_1.39.0.tar.gz
Windows binary (x86_64)covEB_1.39.0.zip
macOS binary (arm64)covEB_1.39.0.tgz
macOS binary (x86_64)covEB_1.39.0.tgz
Dependencies

Depends: R (>= 3.3), mvtnorm, igraph, gsl, Biobase, stats, LaplacesDemon, Matrix

Suggests: curatedBladderData