chromDraw
chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
Bioconductor version: 3.24 · Package version: 2.43.0
ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chromDraw") Details
| Maintainer | Jan Janecka <jan.janecka@ceitec.muni.cz> |
| Author | Jan Janecka, Ing., Mgr. CEITEC Masaryk University |
| License | GPL-3 |
| URL | www.plantcytogenomics.org/chromDraw |
| System Requirements | Rtools (>= 3.1) |
| Downloads rank | 418 |
| Source branch | devel |
| biocViews | Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | chromDraw_2.43.0.tar.gz |
| macOS binary (arm64) | chromDraw_2.43.0.tgz |
| macOS binary (x86_64) | chromDraw_2.43.0.tgz |
Dependencies
Depends: R (>= 3.0.0)
Imports: Rcpp (>= 0.11.1), GenomicRanges (>= 1.17.46)
LinkingTo: Rcpp