cellxgenedp

Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal

Bioconductor version: 3.24 · Package version: 1.17.1

The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based interface, allowing data discovery, viewing, and downloading.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cellxgenedp")

Details

Maintainer	Martin Morgan <mtmorgan.bioc@gmail.com>
Author	Martin Morgan [aut, cre] (ORCID: <https://orcid.org/0000-0002-5874-8148>), Kayla Interdonato [aut]
License	Artistic-2.0
URL	https://mtmorgan.github.io/cellxgenedp/, https://github.com/mtmorgan/cellxgenedp
Bug Reports	https://github.com/mtmorgan/cellxgenedp/issues
Downloads rank	372
Source branch	devel
biocViews	DataImport, SingleCell, Software, ThirdPartyClient

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source package	cellxgenedp_1.17.1.tar.gz
Windows binary (x86_64)	cellxgenedp_1.17.1.zip
macOS binary (arm64)	cellxgenedp_1.17.1.tgz
macOS binary (x86_64)	cellxgenedp_1.17.1.tgz

Dependencies

Depends: R (>= 4.1.0), dplyr

Imports: httr, curl, utils, tools, cli, shiny, DT, rjsoncons

Suggests: zellkonverter, SingleCellExperiment, HDF5Array, tidyr, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery

Reverse dependencies

Suggests Me (1): cellNexus