celda

CEllular Latent Dirichlet Allocation

Bioconductor version: 3.24 · Package version: 1.29.0

Celda is a suite of Bayesian hierarchical models for clustering single-cell RNA-sequencing (scRNA-seq) data. It is able to perform "bi-clustering" and simultaneously cluster genes into gene modules and cells into cell subpopulations. It also provides wrapper functions for DecontX, a Bayesian method to computationally estimate and remove RNA contamination in individual cells without empty droplet information, which is implemented in the 'decontX' package. A variety of scRNA-seq data visualization functions is also included.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("celda")