breakpointR
Find breakpoints in Strand-seq data
Bioconductor version: 3.24 · Package version: 1.31.0
This package implements functions for finding breakpoints, plotting and export of Strand-seq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("breakpointR")Details
| Maintainer | David Porubsky <david.porubsky@gmail.com> |
| Author | David Porubsky, Ashley Sanders, Aaron Taudt |
| License | file LICENSE |
| URL | https://github.com/daewoooo/BreakPointR |
| Downloads rank | 509 |
| Source branch | devel |
| biocViews | Coverage, DNASeq, Sequencing, SingleCell, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | breakpointR_1.31.0.tar.gz |
| Windows binary (x86_64) | breakpointR_1.31.0.zip |
| macOS binary (arm64) | breakpointR_1.31.0.tgz |
| macOS binary (x86_64) | breakpointR_1.31.0.tgz |
Dependencies
Depends: R (>= 3.5), GenomicRanges, cowplot, breakpointRdata
Imports: methods, utils, grDevices, stats, S4Vectors, GenomeInfoDb (>= 1.12.3), IRanges, Rsamtools, GenomicAlignments, ggplot2, BiocGenerics, gtools, doParallel, foreach