branchpointer
Prediction of intronic splicing branchpoints
Bioconductor version: 3.24 · Package version: 1.39.0
Predicts branchpoint probability for sites in intronic branchpoint windows. Queries can be supplied as intronic regions; or to evaluate the effects of mutations, SNPs.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("branchpointer")Details
| Maintainer | Beth Signal <b.signal@garvan.org.au> |
| Author | Beth Signal |
| License | BSD_3_clause + file LICENSE |
| Downloads rank | 576 |
| Source branch | devel |
| biocViews | GenomeAnnotation, GenomicVariation, MotifAnnotation, Software |
Download
Follow the installation instructions to use this package in your R session.
| Source package | branchpointer_1.39.0.tar.gz |
| Windows binary (x86_64) | branchpointer_1.39.0.zip |
| macOS binary (arm64) | branchpointer_1.39.0.tgz |
| macOS binary (x86_64) | branchpointer_1.39.0.tgz |
Dependencies
Depends: caret, R (>= 3.4)
Imports: plyr, kernlab, gbm, stringr, cowplot, ggplot2, biomaRt, Biostrings, parallel, utils, stats, BSgenome.Hsapiens.UCSC.hg38, rtracklayer, GenomicRanges, Seqinfo, IRanges, S4Vectors, data.table