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blacksheepr

Outlier Analysis for pairwise differential comparison

Bioconductor version: 3.24 · Package version: 1.27.0

Blacksheep is a tool designed for outlier analysis in the context of pairwise comparisons in an effort to find distinguishing characteristics from two groups. This tool was designed to be applied for biological applications such as phosphoproteomics or transcriptomics, but it can be used for any data that can be represented by a 2D table, and has two sub populations within the table to compare.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("blacksheepr")

Details

MaintainerRugglesLab <ruggleslab@gmail.com>
AuthorMacIntosh Cornwell [aut], RugglesLab [cre]
LicenseMIT + file LICENSE
Bug Reportshttps://github.com/ruggleslab/blacksheepr/issues
Downloads rank461
Source branchdevel
biocViewsDifferentialExpression, GeneExpression, RNASeq, Sequencing, Software, Transcription, Transcriptomics

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageblacksheepr_1.27.0.tar.gz
Windows binary (x86_64)blacksheepr_1.27.0.zip
macOS binary (arm64)blacksheepr_1.27.0.tgz
macOS binary (x86_64)blacksheepr_1.27.0.tgz
Dependencies

Depends: R (>= 3.6)

Imports: grid, stats, grDevices, utils, circlize, viridis, RColorBrewer, ComplexHeatmap, SummarizedExperiment, pasilla

Suggests: testthat (>= 2.1.0), knitr, BiocStyle, rmarkdown, curl