altcdfenvs
alternative CDF environments (aka probeset mappings)
Bioconductor version: 3.24 · Package version: 2.75.0
Convenience data structures and functions to handle cdfenvs
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("altcdfenvs")Details
| Maintainer | Laurent Gautier <lgautier@gmail.com> |
| Author | Laurent Gautier <lgautier@gmail.com> |
| License | GPL (>= 2) |
| Downloads rank | 718 |
| Source branch | devel |
| biocViews | Annotation, Microarray, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Software, Transcription |
Documentation
- altcdfenvs
- Alternative CDF environments for 2(or more)-genomes chips
- Modifying existing CDF environments to make alternative CDF environments
Download
Follow the installation instructions to use this package in your R session.
| Source package | altcdfenvs_2.75.0.tar.gz |
| Windows binary (x86_64) | altcdfenvs_2.75.0.zip |
| macOS binary (arm64) | altcdfenvs_2.75.0.tgz |
| macOS binary (x86_64) | altcdfenvs_2.75.0.tgz |
Dependencies
Depends: R (>= 2.7), methods, BiocGenerics (>= 0.1.0), S4Vectors (>= 0.9.25), Biobase (>= 2.15.1), affy, makecdfenv, Biostrings, hypergraph
Suggests: plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer