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ZarrArray

Bring Zarr datasets in R as DelayedArray objects

Bioconductor version: 3.24 · Package version: 1.1.7

The ZarrArray package leverages the Rarr package to bring Zarr datasets in R as DelayedArray objects. The main class in the package is the ZarrArray class. A ZarrArray object is an array-like object that represents a Zarr dataset in R. ZarrArray objects are DelayedArray derivatives and therefore support all operations (delayed or block-processed) supported by DelayedArray objects.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ZarrArray")

Details

MaintainerHervé Pagès <hpages.on.github@gmail.com>
AuthorHervé Pagès [aut, cre] (ORCID: <https://orcid.org/0009-0002-8272-4522>), Mike Smith [aut] (ORCID: <https://orcid.org/0000-0002-7800-3848>), Hugo Gruson [aut] (ORCID: <https://orcid.org/0000-0002-4094-1476>), Artür Manukyan [aut] (ORCID: <https://orcid.org/0000-0002-0441-9517>), Levi Waldron [fnd] (ORCID: <https://orcid.org/0000-0003-2725-0694>)
LicenseArtistic-2.0
URLhttps://bioconductor.org/packages/ZarrArray
Bug Reportshttps://github.com/Bioconductor/ZarrArray/issues
Downloads rank182
Source branchdevel
biocViewsDataImport, DataRepresentation, Infrastructure, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageZarrArray_1.1.7.tar.gz
Windows binary (x86_64)ZarrArray_1.1.7.zip
macOS binary (arm64)ZarrArray_1.1.7.tgz
macOS binary (x86_64)ZarrArray_1.1.7.tgz
Dependencies

Depends: R (>= 3.4), methods, SparseArray, DelayedArray (>= 0.39.4)

Imports: stats, tools, BiocGenerics (>= 0.59.12), S4Vectors, IRanges, S4Arrays, Rarr (>= 2.1.9)

Suggests: paws.storage, HDF5Array, testthat, anndataR, knitr, rmarkdown, BiocStyle

Reverse dependencies

Imports Me (2): ImageArray, spatialdataR

Suggests Me (3): BiocDuckDB, BiocGenerics, DelayedArray