VanillaICE
A Hidden Markov Model for high throughput genotyping arrays
Bioconductor version: 3.24 · Package version: 1.75.0
Hidden Markov Models for characterizing chromosomal alteration in high throughput SNP arrays.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("VanillaICE")Details
| Maintainer | Robert Scharpf <rscharpf@jhu.edu> |
| Author | Robert Scharpf [aut, cre] |
| License | LGPL-2 |
| Downloads rank | 891 |
| Source branch | devel |
| biocViews | CopyNumberVariation, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | VanillaICE_1.75.0.tar.gz |
| Windows binary (x86_64) | VanillaICE_1.75.0.zip |
| macOS binary (arm64) | VanillaICE_1.75.0.tgz |
| macOS binary (x86_64) | VanillaICE_1.75.0.tgz |
Dependencies
Depends: R (>= 3.5.0), BiocGenerics (>= 0.13.6), GenomicRanges (>= 1.27.6), SummarizedExperiment (>= 1.5.3)
Imports: MatrixGenerics, Biobase, S4Vectors (>= 0.23.18), IRanges (>= 1.14.0), oligoClasses (>= 1.31.1), foreach, matrixStats, data.table, grid, lattice, methods, GenomeInfoDb (>= 1.11.4), crlmm, tools, stats, utils, BSgenome.Hsapiens.UCSC.hg18
Suggests: RUnit, human610quadv1bCrlmm
Enhances: doMC, doMPI, doSNOW, doParallel, doRedis