Ularcirc

Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

Bioconductor version: 3.24 · Package version: 1.31.0

Ularcirc reads in STAR aligned splice junction files and provides visualisation and analysis tools for splicing analysis. Users can assess backsplice junctions and forward canonical junctions.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Ularcirc")

Details

Maintainer	David Humphreys <d.humphreys@victorchang.edu.au>
Author	David Humphreys [aut, cre]
License	file LICENSE
Downloads rank	499
Source branch	devel
biocViews	AlternativeSplicing, Annotation, Coverage, DataRepresentation, DifferentialSplicing, Genetics, Sequencing, Software, Visualization

Documentation

Ularcirc: A shiny application for canonical and back splicing analysis

Download

Follow the installation instructions to use this package in your R session.

Source package	Ularcirc_1.31.0.tar.gz
Windows binary (x86_64)	Ularcirc_1.31.0.zip
macOS binary (arm64)	Ularcirc_1.31.0.tgz
macOS binary (x86_64)	Ularcirc_1.31.0.tgz

Dependencies

Depends: R (>= 3.4.0)

Imports: AnnotationHub, AnnotationDbi, BiocGenerics, Biostrings, BSgenome, data.table (>= 1.9.4), DT, GenomicFeatures, GenomeInfoDb, GenomeInfoDbData, GenomicAlignments, GenomicRanges, ggplot2, ggrepel, gsubfn, moments, dplyr, plotgardener, R.utils, S4Vectors, shiny, shinydashboard, shinyFiles, shinyjs, yaml

Suggests: BSgenome.Hsapiens.UCSC.hg38, BiocStyle, httpuv, knitr, org.Hs.eg.db, rmarkdown, TxDb.Hsapiens.UCSC.hg38.knownGene