TreeAndLeaf
Displaying binary trees with focus on dendrogram leaves
Bioconductor version: 3.24 · Package version: 1.25.0
TreeAndLeaf implements a hybrid layout strategy that enhances leaf-level visualization in dendrograms. By integrating force-directed graph and tree layout algorithms, it enables projection of multiple layers of information onto graph–tree diagrams.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TreeAndLeaf")Details
| Maintainer | Mauro Castro <mauro.a.castro@gmail.com> |
| Author | Milena Cardoso [aut], Luis Rizzardi [aut], Leonardo Kume [aut], Sheyla Trefflich [ctb], Clarice Groeneveld [ctb], Mauro Castro [aut, cre] (ORCID: <https://orcid.org/0000-0003-4942-8131>) |
| License | Artistic-2.0 |
| URL | https://doi.org/10.1093/bioinformatics/btab819 |
| Bug Reports | https://github.com/sysbiolab/TreeAndLeaf/issues |
| Downloads rank | 463 |
| Source branch | devel |
| biocViews | DataRepresentation, GraphAndNetwork, Network, Software, SystemsBiology, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | TreeAndLeaf_1.25.0.tar.gz |
| Windows binary (x86_64) | TreeAndLeaf_1.25.0.zip |
| macOS binary (arm64) | TreeAndLeaf_1.25.0.tgz |
| macOS binary (x86_64) | TreeAndLeaf_1.25.0.tgz |
Dependencies
Depends: R (>= 4.4)
Imports: RedeR (>= 3.6.1), igraph, ape
Suggests: knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, ggtree, ggplot2, dplyr, dendextend, RColorBrewer
Reverse dependencies
Suggests Me (1): RedeR