TargetSearch
A package for the analysis of GC-MS metabolite profiling data
Bioconductor version: 3.24 · Package version: 2.15.0
This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TargetSearch")Details
| Maintainer | Alvaro Cuadros-Inostroza <acuadros+bioc@gmail.com> |
| Author | Alvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut] |
| License | GPL (>= 2) |
| URL | https://github.com/acinostroza/TargetSearch |
| Bug Reports | https://github.com/acinostroza/TargetSearch/issues |
| Downloads rank | 499 |
| Source branch | devel |
| biocViews | DecisionTree, ImmunoOncology, MassSpectrometry, Preprocessing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | TargetSearch_2.15.0.tar.gz |
| Windows binary (x86_64) | TargetSearch_2.15.0.zip |
| macOS binary (arm64) | TargetSearch_2.15.0.tgz |
| macOS binary (x86_64) | TargetSearch_2.15.0.tgz |