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SpeCond

Condition specific detection from expression data

Bioconductor version: 3.24 · Package version: 1.67.0

This package performs a gene expression data analysis to detect condition-specific genes. Such genes are significantly up- or down-regulated in a small number of conditions. It does so by fitting a mixture of normal distributions to the expression values. Conditions can be environmental conditions, different tissues, organs or any other sources that you wish to compare in terms of gene expression.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SpeCond")

Details

MaintainerFlorence Cavalli <florence@ebi.ac.uk>
AuthorFlorence Cavalli
LicenseLGPL (>=2)
Downloads rank533
Source branchdevel
biocViewsClustering, DifferentialExpression, Microarray, MultipleComparison, ReportWriting, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageSpeCond_1.67.0.tar.gz
Windows binary (x86_64)SpeCond_1.67.0.zip
macOS binary (arm64)SpeCond_1.67.0.tgz
macOS binary (x86_64)SpeCond_1.67.0.tgz
Dependencies

Depends: R (>= 2.10.0), mclust (>= 3.3.1), Biobase (>= 1.15.13), fields, hwriter (>= 1.1), RColorBrewer, methods