SPLINTER
Splice Interpreter of Transcripts
Bioconductor version: 3.24 · Package version: 1.39.0
Provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SPLINTER")Details
| Maintainer | Diana Low <lowdiana@gmail.com> |
| Author | Diana Low [aut, cre] |
| License | GPL-2 |
| URL | https://github.com/dianalow/SPLINTER/ |
| Bug Reports | https://github.com/dianalow/SPLINTER/issues |
| Downloads rank | 546 |
| Source branch | devel |
| biocViews | AlternativeSplicing, GeneExpression, ImmunoOncology, RNASeq, Software, Visualization |
Download
Follow the installation instructions to use this package in your R session.
| Source package | SPLINTER_1.39.0.tar.gz |
| Windows binary (x86_64) | SPLINTER_1.39.0.zip |
| macOS binary (arm64) | SPLINTER_1.39.0.tgz |
| macOS binary (x86_64) | SPLINTER_1.39.0.tgz |
Dependencies
Depends: R (>= 3.6.0), grDevices, stats
Imports: graphics, ggplot2, seqLogo, Biostrings, pwalign, biomaRt, GenomicAlignments, GenomicRanges, GenomicFeatures, Gviz, IRanges, S4Vectors, Seqinfo, utils, plyr, stringr, methods, BSgenome.Mmusculus.UCSC.mm9, googleVis