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Rvisdiff

Interactive Graphs for Differential Expression

Bioconductor version: 3.24 · Package version: 1.11.0

Creates a muti-graph web page which allows the interactive exploration of differential analysis tests. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rvisdiff")

Details

MaintainerDavid Barrios <metal@usal.es>
AuthorCarlos Prieto [aut] (ORCID: <https://orcid.org/0000-0003-2064-4842>), David Barrios [cre, aut] (ORCID: <https://orcid.org/0000-0003-4465-0200>)
LicenseGPL-2 | GPL-3
URLhttps://github.com/BioinfoUSAL/Rvisdiff/
Bug Reportshttps://github.com/BioinfoUSAL/Rvisdiff/issues/
Downloads rank362
Source branchdevel
biocViewsDataRepresentation, DifferentialExpression, RNASeq, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageRvisdiff_1.11.0.tar.gz
Windows binary (x86_64)Rvisdiff_1.11.0.zip
macOS binary (arm64)Rvisdiff_1.11.0.tgz
macOS binary (x86_64)Rvisdiff_1.11.0.tgz
Dependencies

Depends: R (>= 4.5.0)

Imports: edgeR, utils

Suggests: knitr, rmarkdown, DESeq2, limma, SummarizedExperiment, airway, BiocStyle, matrixTests, BiocManager