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Rtpca

Thermal proximity co-aggregation with R

Bioconductor version: 3.24 · Package version: 1.23.0

R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rtpca")

Details

MaintainerNils Kurzawa <nilskurzawa@gmail.com>
AuthorNils Kurzawa [aut, cre], André Mateus [aut], Mikhail M. Savitski [aut]
LicenseGPL-3
Bug Reportshttps://support.bioconductor.org/
Downloads rank414
Source branchdevel
biocViewsDataImport, Proteomics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageRtpca_1.23.0.tar.gz
Windows binary (x86_64)Rtpca_1.23.0.zip
macOS binary (arm64)Rtpca_1.23.0.tgz
macOS binary (x86_64)Rtpca_1.23.0.tgz
Dependencies

Depends: R (>= 4.0.0), stats, dplyr, tidyr

Imports: Biobase, methods, ggplot2, pROC, fdrtool, splines, utils, tibble

Suggests: knitr, BiocStyle, TPP, testthat, rmarkdown