Rbec
Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities
Bioconductor version: 3.24 · Package version: 1.21.0
Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rbec")Details
| Maintainer | Pengfan Zhang <pzhang@mpipz.mpg.de> |
| Author | Pengfan Zhang [aut, cre] |
| License | LGPL-3 |
| Downloads rank | 259 |
| Source branch | devel |
| biocViews | MicrobialStrain, Microbiome, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Rbec_1.21.0.tar.gz |
| Windows binary (x86_64) | Rbec_1.21.0.zip |
| macOS binary (x86_64) | Rbec_1.21.0.tgz |