RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysis
Bioconductor version: 3.24 · Package version: 3.39.0
Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RankProd")Details
| Maintainer | Francesco Del Carratore <francescodc87@gmail.com> |
| Author | Francesco Del Carratore <francesco.delcarratore@manchester.ac.uk>, Andris Jankevics <andris.jankevics@gmail.com> Fangxin Hong <fxhong@jimmy.harvard.edu>, Ben Wittner <Wittner.Ben@mgh.harvard.edu>, Rainer Breitling <rainer.breitling@manchester.ac.uk>, and Florian Battke <battke@informatik.uni-tuebingen.de> |
| License | file LICENSE |
| Downloads rank | 815 |
| Source branch | devel |
| biocViews | DifferentialExpression, GeneExpression, GeneSignaling, Lipidomics, Metabolomics, Microarray, Proteomics, ResearchField, Software, StatisticalMethod, SystemsBiology |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | RankProd_3.39.0.tar.gz |
| Windows binary (x86_64) | RankProd_3.39.0.zip |
| macOS binary (arm64) | RankProd_3.39.0.tgz |
| macOS binary (x86_64) | RankProd_3.39.0.tgz |
Reverse dependencies
Depends On Me (1): tRanslatome
Imports Me (3): mslp, POMA, synlet
Suggests Me (1): pepdiff