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RSVSim

RSVSim: an R/Bioconductor package for the simulation of structural variations

Bioconductor version: 3.24 · Package version: 1.53.0

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RSVSim")

Details

MaintainerChristoph Bartenhagen <c.bartenhagen@uni-koeln.de>
AuthorChristoph Bartenhagen
LicenseLGPL-3
Downloads rank610
Source branchdevel
biocViewsSequencing, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageRSVSim_1.53.0.tar.gz
Windows binary (x86_64)RSVSim_1.53.0.zip
macOS binary (arm64)RSVSim_1.53.0.tgz
macOS binary (x86_64)RSVSim_1.53.0.tgz
Dependencies

Depends: R (>= 3.5.0), Biostrings, GenomicRanges

Imports: methods, IRanges, ShortRead

Suggests: BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, MASS, rtracklayer, pwalign