RSVSim
RSVSim: an R/Bioconductor package for the simulation of structural variations
Bioconductor version: 3.24 · Package version: 1.53.0
RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RSVSim") Details
| Maintainer | Christoph Bartenhagen <c.bartenhagen@uni-koeln.de> |
| Author | Christoph Bartenhagen |
| License | LGPL-3 |
| Downloads rank | 610 |
| Source branch | devel |
| biocViews | Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | RSVSim_1.53.0.tar.gz |
| Windows binary (x86_64) | RSVSim_1.53.0.zip |
| macOS binary (arm64) | RSVSim_1.53.0.tgz |
| macOS binary (x86_64) | RSVSim_1.53.0.tgz |
Dependencies
Depends: R (>= 3.5.0), Biostrings, GenomicRanges
Imports: methods, IRanges, ShortRead
Suggests: BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, MASS, rtracklayer, pwalign