RNAmodR.RiboMethSeq

Detection of 2'-O methylations by RiboMethSeq

Bioconductor version: 3.24 · Package version: 1.27.0

RNAmodR.RiboMethSeq implements the detection of 2'-O methylations on RNA from experimental data generated with the RiboMethSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAmodR.RiboMethSeq")

Details

Maintainer	Felix G.M. Ernst <felix.gm.ernst@outlook.com>
Author	Felix G.M. Ernst [aut, cre] (ORCID: <https://orcid.org/0000-0001-5064-0928>), Denis L.J. Lafontaine [ctb, fnd]
License	Artistic-2.0
URL	https://github.com/FelixErnst/RNAmodR.RiboMethSeq
Bug Reports	https://github.com/FelixErnst/RNAmodR.RiboMethSeq/issues
Downloads rank	441
Source branch	devel
biocViews	Sequencing, Software, Visualization, WorkflowStep

Documentation

RNAmodR: RiboMethSeq

Download

Follow the installation instructions to use this package in your R session.

Source package	RNAmodR.RiboMethSeq_1.27.0.tar.gz
Windows binary (x86_64)	RNAmodR.RiboMethSeq_1.27.0.zip
macOS binary (arm64)	RNAmodR.RiboMethSeq_1.27.0.tgz
macOS binary (x86_64)	RNAmodR.RiboMethSeq_1.27.0.tgz

Dependencies

Depends: R (>= 4.0), RNAmodR (>= 1.5.3)

Imports: methods, S4Vectors, BiocGenerics, IRanges, GenomicRanges, Gviz

Suggests: BiocStyle, knitr, rmarkdown, testthat, rtracklayer, Seqinfo, RNAmodR.Data