RNAmodR.AlkAnilineSeq

Detection of m7G, m3C and D modification by AlkAnilineSeq

Bioconductor version: 3.24 · Package version: 1.27.0

RNAmodR.AlkAnilineSeq implements the detection of m7G, m3C and D modifications on RNA from experimental data generated with the AlkAnilineSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAmodR.AlkAnilineSeq")

Details

Maintainer	Felix G.M. Ernst <felix.gm.ernst@outlook.com>
Author	Felix G.M. Ernst [aut, cre] (ORCID: <https://orcid.org/0000-0001-5064-0928>), Denis L.J. Lafontaine [ctb, fnd]
License	Artistic-2.0
URL	https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq
Bug Reports	https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq/issues
Downloads rank	479
Source branch	devel
biocViews	Sequencing, Software, Visualization, WorkflowStep

Documentation

RNAmodR: AlkAnilineSeq

Download

Follow the installation instructions to use this package in your R session.

Source package	RNAmodR.AlkAnilineSeq_1.27.0.tar.gz
Windows binary (x86_64)	RNAmodR.AlkAnilineSeq_1.27.0.zip
macOS binary (arm64)	RNAmodR.AlkAnilineSeq_1.27.0.tgz
macOS binary (x86_64)	RNAmodR.AlkAnilineSeq_1.27.0.tgz

Dependencies

Depends: R (>= 4.0), RNAmodR (>= 1.5.3)

Imports: methods, S4Vectors, IRanges, BiocGenerics, GenomicRanges, Gviz

Suggests: BiocStyle, knitr, rmarkdown, testthat, rtracklayer, Biostrings, Seqinfo, RNAmodR.Data

Reverse dependencies

Suggests Me (1): RNAmodR.ML