RBPSpecificity
RBP Inherent Specificity and Variation Sensitivity Analysis Tool
Bioconductor version: 3.24 · Package version: 0.99.6
Provides tools to analyze RNA Binding Protein (RBP) binding specificities from high-throughput sequencing data. Functions include calculating K-mer enrichment, Inherent Specificity (IS), and Mutational Sensitivity (VS), along with visualization of IS and VS. For detailed methodology and applications, please refer to our manuscript (see URL field or vignette).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RBPSpecificity") Details
| Maintainer | Soon Yi <cu.soonyi@gmail.com> |
| Author | Soon Yi [aut, cre] (ORCID: <https://orcid.org/0000-0002-4535-6532>), National Institutes of Health [fnd] (T32 GM152319) |
| License | GPL-3 |
| URL | https://www.biorxiv.org/content/10.1101/2025.03.28.646018v2, https://github.com/S00NYI/RBPSpecificity, https://github.com/S00NYI/BITS_Specificity |
| Bug Reports | https://github.com/S00NYI/RBPSpecificity/issues |
| Downloads rank | 47 |
| Source branch | devel |
| biocViews | Coverage, GeneRegulation, GenomeAnnotation, KEGG, MotifAnnotation, Sequencing, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | RBPSpecificity_0.99.6.tar.gz |
| Windows binary (x86_64) | RBPSpecificity_0.99.6.zip |
| macOS binary (arm64) | RBPSpecificity_0.99.6.tgz |
| macOS binary (x86_64) | RBPSpecificity_0.99.6.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: Biostrings, BSgenome, GenomeInfoDb, GenomicRanges, ggplot2, methods, reshape2, S4Vectors, stats, utils
Suggests: BiocStyle, BSgenome.Hsapiens.UCSC.hg38, IRanges, knitr, rmarkdown, testthat